I think, since the company legally owns the bike, they can just give it to you as a benefit. This benefit is taxable, however, and will be like adding an extra £250 (assming £1000 max spend and HMRC resale value of 25% at 1 year old) to your salary. Of course, the longer you wait, the lower the resale value and thus the tax paid.
This is not to be confused with the old system where you owned the bike after the repayment period.
If you can get your company to do this it works out a hell of a lot cheaper, and the company no longer has to worry about the bike.
I must point out that I’m not saying this as fact. This is what my research suggests, and the route I’ll attempt when my repayment period is up, but is in no means confirmed. Some of this information I got by talking to someone claiming to be an HMRC employee.