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The Coronavirus Discussion Thread.

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Zahawi - says yes

Gove - says no

Same old Govt mixed messages


 
Posted : 01/12/2020 6:29 pm
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TiReD, we already know that the probability of serious infection is around 10% (ballpark)

Probably 3-10x lower based on the ONS survey of prevalence. In the Lilly antibody trial, hospital admission rate for placebo AFTER symptom onset was 9/156. When dosed with antibody it went down to 6/421. This ignores mild and asymptomatic infections who did not report.

The point estimate for none-in-N is always zero. Hence 100% effective. The true interpretation depends on your statistical belief structure. Giving exogenous antibodies AFTER infection (with symptoms) reduces hospitalisations by 75%. Having them before infection, even polyclonal vaccine-home-made at varying potency and titer, will give protection to a lower viral load challenge.

I'm less worried about the effects on transmission.


 
Posted : 01/12/2020 6:35 pm
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Yes, I think the OX/AZ vaccine can be approved and used, particularly as all vaccines (and antibodies) prevent serious disease. That is a huge benefit. For the West, cheap is not important – the cost compared to the economic cost of NPIs as a whole is trivial.

but what are the current estimates for % population to have been infected?

Based on most up-to-date ONS survey – note lower rates of infection mean that people lose their seropositivity, so these numbers may not reflect total numbers. Less than 1/8 is a robust answer.

I'm still wondering what is the reason to give the vaccine to people with active antibodies ?
Does a vaccine do something different or last longer to acquired antibodies or is it just cheaper than testing and we have surplus vaccine available? (non of which I thought to be the case but I stopped following)


 
Posted : 01/12/2020 6:51 pm
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The home where my mum resides contacted my dad today to seek permission to administer her a vaccine next week. He’s agreed and it appears that it’s being lined up that with a negative test, home visits are back on soon.


 
Posted : 01/12/2020 6:56 pm
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Let's hope so rockhopper, fingers crossed.


 
Posted : 01/12/2020 7:28 pm
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Yes, he’s already said it’s the best present he could ever receive. At 90 and 91 respectively, married for 70 years, certainly my dad isn’t thinking long term consequences of the vaccine. For clarity, if it wasn’t obvious, my mum hasn’t the capacity to make the decision herself.


 
Posted : 01/12/2020 7:36 pm
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Does that mean it has a 60% chance of stopping me contracting the virus? If that’s the case then surely when things get back to ‘normal’ my exposure will be numerous times higher than it is now, and as such my risk of gettimg it will actually be greater.

You can only catch it if someone else has got it. So if everyone was magically vaccinated on the same day, and piled into their favourite pub/tubetrain/orgy the week after, then what you said would be correct.
Slowly building up the number of immune people and slowly increasing societal contact will cause it to (not completely) die down.


 
Posted : 01/12/2020 7:37 pm
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I’m still wondering what is the reason to give the vaccine to people with active antibodies ?

How are you identifying people with active antibodies?


 
Posted : 01/12/2020 7:38 pm
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Yes, he’s already said it’s the best present he could ever receive. At 90 and 91 respectively, married for 70 years

That's awesome mate 💙


 
Posted : 01/12/2020 7:43 pm
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Basically it is faster and easier to give the vaccine than test for antibodies to covid. So it becomes a simple calculation.
Oxford vaccine is £10, moderna is £40.. The private antibody tests are £65 so assuming some uplift they are probably about comparable with the expensive vaccine but considering run times, reporting etc it will be much faster to just give people the vaccine (15mins including waiting time) and you then don't need all the machine run time and additional staff to run the tests.
Financially the costs are probably about the same but we don't have the capacity to test everyone for antibodies.


 
Posted : 01/12/2020 7:52 pm
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give the vaccine to people with active antibodies ?

There is no data as these people were excluded from the first trials (I’m sure they’ll be studied in smaller trials). I imagine it will act as a boosting effect similar to other coronavirus infections where antibodies wane over time. Think of the shingles vaccine that does the same. Repriming your defences.

I view this virus like the other four of its type. More pathogenic perhaps, but likely to have waning immunity, reinfection and boosting. The vaccine has been shown to be therapeutic in that it protects from severe infection. It may reduce infectiousness too, but this was not the subject of the trials.

A protective vaccine is great news. If it gives you the equivalent of the first ten years of past infections, we’ll be in a good place. I expect seasonal vaccination, possibly annually or biannually with a flu jab. Then in ten years time this will be a seasonal cold. It may still pose a problem for some abs treatments will be available. That’s not always a given for the vulnerable who are susceptible to other viruses.

Thanks for sharing rockhopper, made my day.


 
Posted : 02/12/2020 1:00 am
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Interesting Opinion article in the Guardian on today's vote

https://www.theguardian.com/politics/2020/dec/01/major-sulk-enters-his-darkest-hour-as-rank-and-file-desert-him


 
Posted : 02/12/2020 1:07 am
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Green light for the Pfizer vaccine in UK. Now how to actually distribute it.


 
Posted : 02/12/2020 9:36 am
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You would assume that it will have to be hospital focused. So this vaccine should be for health workers, and clinically vulnerable including care homes as they should be relatively easy to get.
it would be the general public that would be a challenge.
Let's hope they do it that way


 
Posted : 02/12/2020 9:51 am
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It's all happening, my wife and her colleagues have volunteered to begin vaccinating (she's an opthalmic nurse), Her team to train in January to vaccinate the public then.


 
Posted : 02/12/2020 10:04 am
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When do we think the men in grey suits will be taking the ceremonial revolver to 10 Downing St ?


 
Posted : 02/12/2020 10:17 am
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Not until after January next year.
they need a scapegoat ready to use.


 
Posted : 02/12/2020 10:23 am
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How are the Vaccine success rates calculated?
Is it simply a matter of giving say 1000 people the vaccine and then seeing how many of them contract Covid in the next n weeks/months?

Those people will carry on using masks, washing hands and social distancing. What is to say the success of the vaccine is not dowm to those factors?

I guess they are comparing the figures against another sample group that has had a placebo.

Are there any results from testing where the vaccinated group were subsequently deliberately infected with the virus? I know this option was mooted several months ago as being the most accurate way of determining efficacy.


 
Posted : 02/12/2020 10:25 am
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It is exactly as you describe. The numbers infected in the vaccine group measured against the numbers infected in the control group.
live virus challenge studies have not been started yet as far as I know. I suspect they are recruiting though


 
Posted : 02/12/2020 10:28 am
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Efficacy is calculated based on events not total population treated. So you dose 40,000 people, half on each arm, and you look when you’ve acquired 100 infections. The null hypothesis is that there will be about 50 infections in a each. The alternative is that the split is not even because the vaccinated arm has done something.

The mRNA vaccines split about 5/95. Think heads and tails. The AZ/OX vaccine split about 29/70 (but they haven’t released the real numbers). Both are very unlikely by chance.

There are other analyses that correct for months of exposure too, because one has monitored the early recipients for longer. Or you cut the data at 28 days post last dose. The analysis is about as robust and assumption-free as is possible.

I remain unconvinced by challenge studies for sars-cov-2. The pathogenesis is still not well characterised. We have rescue treatments but they have to be given early at the onset of symptoms to work. So we shall see about the ethics. I wouldn’t volunteer, and I would for influenza challenge. I’ve had both.

[tl:dr] vaccine efficacy is measured similar to the toss of a coin. Flipping only five heads in 100 is very unlikely.


 
Posted : 02/12/2020 10:45 am
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Just returning to the passport question interesting article here that enters the moral maze over ethics.
https://www.hl.co.uk/news/2020/12/2/should-pubs-cinemas-and-airlines-require-covid-vaccine-passports
The argument reminds me of Vroomfondel and Majikthise discussing Deepthought in Hitchhikers Guide.

My own view is vaccinate for the greater good.
If ant-vaxers die out I don't care as long as they don't take me with them.

Dulce et Decorum est and all that.


 
Posted : 02/12/2020 11:45 am
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More Cash

How are you identifying people with active antibodies?

I'm not as I'm not PHE. France seem to be doing it so I don't understand why we can't?
What I'm trying to understand is why PHE are actively preventing it? Is it science or politics?

The same for active testing why are Govt/PHE not acknowledging negative tests for people in track and trace?
Is it because they are unreliable or too expensive or not available or is it just political?

A personal example is Jnr is self isolating ... the instructions are NOT to get tested unless he has symptoms but aged 11 his chance of symptoms seems pretty low (or certainly not high) - don't know what the exact figures are.

3 kids in his class later tested positive ...
but of these 1 broke the rules and got tested when they were asymptomatic... so who knows who has and hasn't had the virus.

The other kids got tested against the rules still can't go back to school regardless of how many negative tests so we didn't even bother getting a test as it makes no difference if its negative or a subsequent one a week later is still negative.

Meanwhile his mother is teaching and I'm out and about... and he's not even allowed to leave the house for a bike ride.
His isolation is over tomorrow but I can't understand how that means anything when his mother is in school and I as a minimum had an operation the day before.

If track and trace worked I wouldn't even have been able to have the operation... as had there not been delays in the testing of the 3 initial kids he would have been told to self isolate and my operation would have been cancelled. So basically his isolation actually started before my operation but as nooone had results or whatever I was able to go through ....

The other side is people who are pretty sure they already had it can't get tested (and if they do privately the results are ignored)

TiReD

There is no data as these people were excluded from the first trials (I’m sure they’ll be studied in smaller trials). I imagine it will act as a boosting effect similar to other coronavirus infections where antibodies wane over time. Think of the shingles vaccine that does the same. Repriming your defences.

I don't disagree based on my very limited knowledge but I understood and may be wrong that we have very limited supply of the SARS-COV19 vaccines but as much shingles vaccine as we can use and if we don't use the shingles vaccine before it expires it will need to be destroyed anyway ???

I view this virus like the other four of its type. More pathogenic perhaps, but likely to have waning immunity, reinfection and boosting. The vaccine has been shown to be therapeutic in that it protects from severe infection. It may reduce infectiousness too, but this was not the subject of the trials.

Again from my limited knowledge surely this would have been a prudent assumption to start out with?

The government led response seems to have been the entire opposite from day 1?
The absence of evidence seems to have been taken as evidence... it absolutely couldn't be spread by airborne means and could only be spread by touch. This seems counter to the common 4 ... surely a working assumption in the absence of evidence to the contrary would be to "view this virus like the other four of its type. More pathogenic perhaps.." We were told kids cannot spread the virus... again it seems based on lack of evidence constituting evidence. 7-8 months later NHE are still doing their best to prevent children being tested to skew the results.

A protective vaccine is great news. If it gives you the equivalent of the first ten years of past infections, we’ll be in a good place. I expect seasonal vaccination, possibly annually or biannually with a flu jab. Then in ten years time this will be a seasonal cold. It may still pose a problem for some abs treatments will be available. That’s not always a given for the vulnerable who are susceptible to other viruses.

From a personal perspective my only real motivation to get vaccinated is to prevent spreading the virus to the vulnerable.

I've got 3-4 of the yearly nag letters from the GP about flu virus vaccines...but they don't say anything about protecting others or why this years expected mutation would affect me. Perhaps naïve but I've never managed to develop flu (as in disease symptoms) regardless of exposure so why would this year be any different? I know it could be different but in the 40 odd years of having a full immune system the odds of this year being different for me don't seem very high.

Just to be clear I've nothing against getting the vaccine, it just seems like a waste of time and NHS resources and this year a chance to pick on SARS-Cov19.


 
Posted : 02/12/2020 11:46 am
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I think it's fair to say, that as a nation, we've lagged behind the curve every step of the way and I personally have little faith or trust in the current government.

I hear on the news today, that we're first to approve the new vaccine but that Europe claim their checks are safer than ours.

I'm not against vaccines. After all, I've had the live version of it, I can't see what harm the dead version would do. I am however, curious as to why we're now suddenly first to something.

There are a lot of people in this thread more learned that I. Perhaps they could shed some light on this sudden change in competence.


 
Posted : 02/12/2020 12:37 pm
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The MHRA ain't the government.


 
Posted : 02/12/2020 12:39 pm
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True, but it seems harder than it should be to remove political influence from a lot if places it shouldn't be.

Is there any truth in the claim that the European version is more thorough?


 
Posted : 02/12/2020 12:45 pm
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The MHRA ain’t the government.

That's a matter of perspective... we have been through schools, councils, NHS etc. (even BBC) elsewhere and earlier in this thread and the distinction isn't black and white when "the government" can appoint an overseer or czar at it's whim if it doesn't get the answers it wants.


 
Posted : 02/12/2020 12:51 pm
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the distinction isn’t black and white when “the government” can appoint an overseer or czar at it’s whim if it doesn’t get the answers it wants.

Where is the evidence that the regulatory body has been populated by government stooge yes men (or women) ?


 
Posted : 02/12/2020 1:02 pm
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That’s a matter of perspective

No - that's the FDA, where the FDA Commissioner is a political appointment. MHRA is wholly independent statutory body. Just like the CAA for aviation.

The MHRA have traditionally done a lot of the EMA "heavy lifting" for drug reviews. The reward for this, of course, was location in London and I have friends that work there. Not any more. All country's licensing authorities can approve for their own country independently if an application is submitted. Pfizer/Biontech will have submitted to individual countries for emergency approval - on a rolling basis as soon as data was available. The UK was first - by a few days.

as much shingles vaccine as we can use and if we don’t use the shingles vaccine before it expires it will need to be destroyed anyway ???

GSK was unable to meet shingrix demand actually. Recovered for the wrong reasons as vaccination declined!


 
Posted : 02/12/2020 1:12 pm
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Thanks TiRed, that's reassuring. Should I take that to mean that EMA isn't any better and on this occasion, the coercion of facts is on their part rather than ours?


 
Posted : 02/12/2020 1:21 pm
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Any EMA delay is probably down to their project managers trying to schedule zoom meetings. There's quite a bit of cat-herding and a lot of academics involvement 😉 . The FDA, by contrast, is a slick professional organisation of full-time employees.

I read nothing into it. Agencies like to assert their independence. If you want to upset the FDA in a meeting, just say "The EMA said..." 😀


 
Posted : 02/12/2020 1:27 pm
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Where is the evidence that the regulatory body has been populated by government stooge yes men (or women) ?

This is the black and white point....
The government don't need to appoint someone if they simply make an implicit threat that they will.
They can either just appoint someone where they can or just invent a new kwango if they can't.

BBC? Test and Trace? NHS ?


 
Posted : 02/12/2020 1:32 pm
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BBC? Test and Trace? NHS ? SPACE LIZARDS?


 
Posted : 02/12/2020 1:36 pm
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This is the black and white point….

Just look at the US and FDA. We are not the US.

https://www.google.com/search?client=firefox-b-d&q=fda+commissioner+summoned


 
Posted : 02/12/2020 1:45 pm
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That’s a matter of perspective

It's really not.


 
Posted : 02/12/2020 2:31 pm
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BBC? Test and Trace? NHS ? SPACE LIZARDS?

BBC a direct threat to report what they are told and carried through
Test and Trace - failed jockey and miserably failed CEO married to a conservative MP and Tory whip in the Lords then appointed Chair of NHS improvement then votes in a Tory Lord as Chair of NHS?

Not sure where the space lizards come in ?


 
Posted : 02/12/2020 2:40 pm
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The government don’t need to appoint someone if they simply make an implicit threat that they will.
They can either just appoint someone where they can or just invent a new kwango if they can’t.

BBC? Test and Trace? NHS ?

Is paranoia a symptom of Covid itself, or a sign that people have had way too much time home alone with the internet?


 
Posted : 02/12/2020 2:41 pm
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Is paranoia a symptom of Covid itself, or a sign that people have had way too much time home alone with the internet?

He's never been spotted in the same place as chewkw. Makes ye think.


 
Posted : 02/12/2020 2:43 pm
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Bit unfair chaps. Consider his position.


 
Posted : 02/12/2020 2:54 pm
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Steve, as you're no doubt convalescing, re-register for BBC sounds and listen to 'how to vaccinate the world'. There are a few things explained there I think you'll find useful.


 
Posted : 02/12/2020 2:56 pm
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Yeah, sorry, too late to edit. I was a bit trigger happy there.


 
Posted : 02/12/2020 3:15 pm
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It looks like i'm getting it in the next couple of weeks so will report back if I grow scaly green skin


 
Posted : 02/12/2020 3:31 pm
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Efficacy is calculated based on events not total population treated. So you dose 40,000 people, half on each arm, and you look when you’ve acquired 100 infections. The null hypothesis is that there will be about 50 infections in a each. The alternative is that the split is not even because the vaccinated arm has done something.

The mRNA vaccines split about 5/95. Think heads and tails. The AZ/OX vaccine split about 29/70 (but they haven’t released the real numbers). Both are very unlikely by chance.

@Tired are you mistaken with your figures/calculation above or have I been misunderstanding the figures quoted for vaccine effectiveness ~95% for mRNA and ~70% for OX/AZ.

If someone told me a vaccine was 50% effective then I’d assume it would cut the number of infections in half, but the inference from your numbers above is it would do absolutely nothing, 50/50 infections vaccine/placebo

For the ~70% effective oxford vaccine where you quote 29/70, then zero effect would be 49.5/49.5 (99 samples). Therefore number of infections prevented based on 29/70 is 49.5-29=20.5, surely then the effectiveness is 20.5/49.5 = 41%


 
Posted : 02/12/2020 10:33 pm
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but the inference from your numbers above is it would do absolutely nothing, 50/50 infections vaccine/placebo

No, Tired said:

The null hypothesis is that there will be about 50 infections in a each. The alternative is that the split is not even because the vaccinated arm has done something.

The null hypothesis is essentially what would happen if there was no difference, in this case of 100 infections, you would expect about 50 from each if the drug does nothing vs placebo.
Therefore, if there IS a statistically significant difference between the arms it's attributable to the drug.

That is, assuming you get your randomization (who goes into what treatment arm) correct of course, and don't unconsciously bias one of the groups towards better/worse outcomes. Thats pretty basic and I wouldn't usually bother saying it - but you know, we seem to have given a load of people the wrong dose so.....


 
Posted : 02/12/2020 11:17 pm
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The null hypothesis is essentially what would happen if there was no difference, in this case of 100 infections, you would expect about 50 from each if the drug does nothing vs placebo.
Therefore, if there IS a statistically significant difference between the arms it’s attributable to the drug.

That is, assuming you get your randomization (who goes into what treatment arm) correct of course, and don’t unconsciously bias one of the groups towards better/worse outcomes. Thats pretty basic and I wouldn’t usually bother saying it – but you know, we seem to have given a load of people the wrong dose so…..

Yes I know and that is what I stated - 50/50 is zero effect, based on the numbers tired gave the 95% mRNA is only 90% effective and the ~70% ox/az is only 41%. My point was using tired’s rationale for his numbers above then a completely useless vaccine would be rated at 50% effective (50/100) but the actual equation should be (50-50)/100 = 0% effective

Edit :- What I’m trying to say is if you have a 70% effective vaccine then in my mind the split should be 15/85 not ~30/70 as tired was suggesting.


 
Posted : 02/12/2020 11:31 pm
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I’ve just listened to the BioNTech boss on news night - the 90% efficacy means 90% reduction in symptoms.

I have it in my head the Ox/Az 70% is actually reduction in infection rather than Symptoms. They also have had no serious cases.


 
Posted : 03/12/2020 12:12 am
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