Stuff them in the wash (possibly in a pillowcase) with some sports wash (then again with nikwax tech wash*, then he re-proofing wash).
My wetsuit boots probably smell worse as they rarely dry out, but as they’re getting to the end of their life I’ve just started washing them with the rest of my kit despite the care instructions saying hand wash in fresh water only and they’re not dying any quicker and don’t make the entire house smell of trench foot for days if I forget to leave them outside.
*I don’t find tech wash very good at removing smell, hence wash with some anti bacterial wash first.