No it's not. It's just usual mtb b*****ks. Facing does nothing to ensure that the two sides of the BB are parallel to each other, only that the thread and face on each side are in line on that side (at least using the tools that the vast majority of shops use).
So for them not to be square you are saying the thread might be cut off line? My bb facing tool (a cyclus) has a piece which threads in on either side so the central spindle runs straight down the middle of the tube, and the cutting face is square to that. So I'm not sure how it could be cutting non-parallel faces. My experience is that in doing this you often discover that the faces are not square.
Getting back to the question – mtbfix, you are right that it's less than ideal, it's a 'bodge' to make a single cog drivetrain work on a bike not designed for it. The right way to do it is to have a frame with an ebb in the shell (or sliding or horizontal dropouts if that's your thing).