If you specifically specc’d contacts then they have to install them. They’ll have to chase the cables and bring in a fixer to make it good. On older houses you can route cables under the upstairs floor but new builds tend to be chipboard flooring upstairs rather than boards.
You can fit wireless (Visonic are good) contacts but you’ll need a new panel too, otherwise they’ll all be connected to the same zone. Although this possibly isn’t a problem if it’s just the two door contacts.
Unless you’ve also specc’d an ARC service (e.g. ADT) then you’re reliant on someone responding to the alarm anyway so I don;t think i’d be panicing unduly. PIRs are fine unless you have pets