It’s almost impossible to say.
I’ve got two sets of wheels for one of my bikes that both have Hope hubs and rotors, and the brake calipers don’t require adjusting when I switch them round. So my advice would be to get wheels with the exact same hubs and rotors.
Even if the rotors sit in exactly the same position on the hubs, its actually the axle width that can make a difference to where the caliper sits, as the forks/stays usually flex in or out when the QR/bolt is tightened.
If you were to buy two sets of wheels, both running QR skewers front and back, and the hub axles happen to have locknuts (i.e. threaded axles as opposed to press-fit bearings), then if you find there’s a difference in rotor/pad alignment, you could compensate by fitting a thin washer behind the axle locknut.