Not convinced by that, what you had lipseal was probably a very unlucky incident, but that stuff does not strip easily!
I’d expect the damper side to be the pain in the bum, basically what’s happened is you haven’t got the pushrod down far enough to allow it to engage with the bolt. You said it worked fine in the spring side, which will be because of the spring action forcing the pushrod to stay in place as you try and push the lowers on. Essentially the pushrods need to have a very snug fit to stop the lubrication oil coming out the bottom, which can make locating them a bit of a faff.
My advice would be to put the lockout on (If you’ve got it), then try and compress the lowers. The lockout will prevent the pushrod going down and thus force it to engage with the lowers so you can fit the footnut.
If for some reason you don’t have lockout, deflate the air spring or remove the spring if it’s coil and then force the lowers down to bottom the fork out. This should force the pushrod into the lowers properly and allow you to engage the footnut.