I have this very same problem (Transition bandit). Unfortunately I couldn’t test this as it was a frame only purchase and there are no test bikes here in Sweden.
It seems to me now that a lot of bike companies are putting long seat tubes on frames, which limits you using a proper length dropper post. Another guy riding last night had the same problem on his Canyon Nerve, which has a reverb stealth (150mm travel) fitted as standard.
Mine is only maybe 1-2cm too high, but enough to be annoying and will be worse when I switch from SPDs to flat pedals.
As I want as much drop as possible I’m going to go for option 1 (2cm), but will need some courage before picking up that hacksaw! Thankfully the frame came with touch-up paint, so I’ll try not to make it look like a dogs dinner.