As said the wavey rotors are meant to help wipe crap off the pads to maintain braking.
The Galfer discs as used by Magura are wavy, but throughout the pattern the disc area remains the same, if you look at any other wavy disc the disc surface gets wider and shallower at different parts of the wavy bit, which is why you get the pulsing.
I have a 160mm front Hope Mono, its really bad for pulsing. I rotate it every few months for an older XT disc as they seem to help keep the pads worn evenly, swapping them will solve the pulsing for a few months till it gets noticeable, then I swap them back and the Hope disc will be fine for a bit.