No, I find the commute back in the same shorts pretty nasty to be honest, so wearing the next day is out for me! As said, although the total wear time is not a lot, the bacteria grows while not being worn. I find (or found as I’m a bit lazy with commuting by bike atm) that when riding regularly, should you get a sore then it became very difficult to heal up. With that in mind, I bought a separate tub of chamois crème for keeping at work.
However, if I didn’t sweat so much (I’ve quite a long commute), then I probably would.
I have quite a few pairs of shorts though. I have a lot of old ones which have worn holes in and I just wear them as underwear. So put some baggy shorts over in summer, or tights in winter to hide the exposed fleshy bits…